ELFI
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Getting started
Installation
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Quickstart
API
Frequently Asked Questions
Usage
ELFI tutorial
Adaptive distance
Adaptive Approximate Bayesian Computation Tolerance Selection
Parallelization
BOLFI
Using non-Python operations
Implementing a new inference method
Developer documentation
ELFI architecture
Contributing
ELFI
Index
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Index
A
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B
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C
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D
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E
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F
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G
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H
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I
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L
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M
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N
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O
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P
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R
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S
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T
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U
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V
A
acq_batch_size (elfi.BayesianOptimization property)
(elfi.BOLFI property)
acquire() (elfi.methods.bo.acquisition.ExpIntVar method)
(elfi.methods.bo.acquisition.LCBSC method)
(elfi.methods.bo.acquisition.MaxVar method)
(elfi.methods.bo.acquisition.RandMaxVar method)
(elfi.methods.bo.acquisition.UniformAcquisition method)
AdaptiveDistance (class in elfi)
AdaptiveDistanceSMC (class in elfi)
AdaptiveThresholdSMC (class in elfi)
add_batch() (elfi.ArrayPool method)
(elfi.OutputPool method)
add_data() (elfi.AdaptiveDistance method)
add_store() (elfi.ArrayPool method)
(elfi.OutputPool method)
adjust() (elfi.methods.post_processing.LinearAdjustment method)
adjust_posterior() (in module elfi)
ArrayPool (class in elfi)
B
batch_size (elfi.AdaptiveDistanceSMC property)
(elfi.AdaptiveThresholdSMC property)
(elfi.BayesianOptimization property)
(elfi.BOLFI property)
(elfi.BSL property)
(elfi.methods.inference.parameter_inference.ParameterInference property)
(elfi.Rejection property)
(elfi.ROMC property)
(elfi.SMC property)
batches (elfi.methods.inference.parameter_inference.ParameterInference attribute)
BayesianOptimization (class in elfi)
become() (elfi.AdaptiveDistance method)
(elfi.Constant method)
(elfi.Discrepancy method)
(elfi.Distance method)
(elfi.Operation method)
(elfi.Prior method)
(elfi.RandomVariable method)
(elfi.Simulator method)
(elfi.Summary method)
BOLFI (class in elfi)
BolfiSample (class in elfi.methods.results)
BSL (class in elfi)
BslSample (class in elfi.methods.results)
C
clear() (elfi.ArrayPool method)
(elfi.OutputPool method)
client (elfi.methods.inference.parameter_inference.ParameterInference attribute)
close() (elfi.ArrayPool method)
(elfi.OutputPool method)
compare_models() (in module elfi)
compile_operation() (elfi.Prior static method)
(elfi.RandomVariable static method)
compute_divergence() (elfi.ROMC method)
compute_eps() (elfi.ROMC method)
compute_ess() (elfi.methods.results.BslSample method)
(elfi.ROMC method)
compute_expectation() (elfi.ROMC method)
Constant (class in elfi)
copy() (elfi.ElfiModel method)
current_params (elfi.BSL property)
current_population_threshold (elfi.AdaptiveDistanceSMC property)
(elfi.AdaptiveThresholdSMC property)
(elfi.SMC property)
D
delete() (elfi.ArrayPool method)
(elfi.OutputPool method)
delta (elfi.methods.bo.acquisition.LCBSC property)
dim (elfi.methods.results.BolfiSample property)
(elfi.methods.results.BslSample property)
(elfi.methods.results.RomcSample property)
(elfi.methods.results.Sample property)
(elfi.methods.results.SmcSample property)
discrepancies (elfi.methods.results.BolfiSample property)
(elfi.methods.results.BslSample property)
(elfi.methods.results.RomcSample property)
(elfi.methods.results.Sample property)
(elfi.methods.results.SmcSample property)
Discrepancy (class in elfi)
Distance (class in elfi)
distance_hist() (elfi.ROMC method)
distribution (elfi.Prior property)
(elfi.RandomVariable property)
draw() (in module elfi)
E
ElfiModel (class in elfi)
estimate_regions() (elfi.ROMC method)
eval_posterior() (elfi.ROMC method)
eval_unnorm_posterior() (elfi.ROMC method)
evaluate() (elfi.methods.bo.acquisition.ExpIntVar method)
(elfi.methods.bo.acquisition.LCBSC method)
(elfi.methods.bo.acquisition.MaxVar method)
(elfi.methods.bo.acquisition.RandMaxVar method)
(elfi.methods.bo.acquisition.UniformAcquisition method)
evaluate_gradient() (elfi.methods.bo.acquisition.ExpIntVar method)
(elfi.methods.bo.acquisition.LCBSC method)
(elfi.methods.bo.acquisition.MaxVar method)
(elfi.methods.bo.acquisition.RandMaxVar method)
(elfi.methods.bo.acquisition.UniformAcquisition method)
ExpIntVar (class in elfi.methods.bo.acquisition)
external_operation() (elfi.tools method)
extract_posterior() (elfi.BOLFI method)
extract_result() (elfi.AdaptiveDistanceSMC method)
(elfi.AdaptiveThresholdSMC method)
(elfi.BayesianOptimization method)
(elfi.BOLFI method)
(elfi.BSL method)
(elfi.methods.inference.parameter_inference.ParameterInference method)
(elfi.Rejection method)
(elfi.ROMC method)
(elfi.SMC method)
F
finished (elfi.AdaptiveDistanceSMC property)
(elfi.AdaptiveThresholdSMC property)
(elfi.BayesianOptimization property)
(elfi.BOLFI property)
(elfi.BSL property)
(elfi.methods.inference.parameter_inference.ParameterInference property)
(elfi.Rejection property)
(elfi.ROMC property)
(elfi.SMC property)
fit() (elfi.BOLFI method)
(elfi.methods.post_processing.LinearAdjustment method)
fit_posterior() (elfi.ROMC method)
flush() (elfi.ArrayPool method)
(elfi.OutputPool method)
G
generate() (elfi.AdaptiveDistance method)
(elfi.Constant method)
(elfi.Discrepancy method)
(elfi.Distance method)
(elfi.ElfiModel method)
(elfi.Operation method)
(elfi.Prior method)
(elfi.RandomVariable method)
(elfi.Simulator method)
(elfi.Summary method)
get_batch() (elfi.ArrayPool method)
(elfi.OutputPool method)
get_client() (in module elfi)
get_default_model() (in module elfi)
get_reference() (elfi.ElfiModel method)
get_sample_covariance() (elfi.methods.results.BolfiSample method)
(elfi.methods.results.BslSample method)
(elfi.methods.results.RomcSample method)
(elfi.methods.results.Sample method)
(elfi.methods.results.SmcSample method)
get_state() (elfi.ElfiModel method)
get_store() (elfi.ArrayPool method)
(elfi.OutputPool method)
H
has_context (elfi.ArrayPool property)
(elfi.OutputPool property)
has_store() (elfi.ArrayPool method)
(elfi.OutputPool method)
I
idata (elfi.methods.results.BolfiSample property)
(elfi.methods.results.BslSample property)
(elfi.methods.results.RomcSample property)
(elfi.methods.results.Sample property)
(elfi.methods.results.SmcSample property)
infer() (elfi.AdaptiveDistanceSMC method)
(elfi.AdaptiveThresholdSMC method)
(elfi.BayesianOptimization method)
(elfi.BOLFI method)
(elfi.BSL method)
(elfi.methods.inference.parameter_inference.ParameterInference method)
(elfi.Rejection method)
(elfi.ROMC method)
(elfi.SMC method)
init_adaptation_round() (elfi.AdaptiveDistance method)
init_state() (elfi.AdaptiveDistance method)
is_multivariate (elfi.methods.results.BolfiSample property)
(elfi.methods.results.BslSample property)
(elfi.methods.results.OptimizationResult property)
(elfi.methods.results.RomcSample property)
(elfi.methods.results.Sample property)
(elfi.methods.results.SmcSample property)
iterate() (elfi.AdaptiveDistanceSMC method)
(elfi.AdaptiveThresholdSMC method)
(elfi.BayesianOptimization method)
(elfi.BOLFI method)
(elfi.BSL method)
(elfi.methods.inference.parameter_inference.ParameterInference method)
(elfi.Rejection method)
(elfi.ROMC method)
(elfi.SMC method)
L
LCBSC (class in elfi.methods.bo.acquisition)
LinearAdjustment (class in elfi.methods.post_processing)
load() (elfi.ElfiModel class method)
load_model() (in module elfi)
M
max_parallel_batches (elfi.methods.inference.parameter_inference.ParameterInference attribute)
MaxVar (class in elfi.methods.bo.acquisition)
model (elfi.methods.inference.parameter_inference.ParameterInference attribute)
N
n_evidence (elfi.BayesianOptimization property)
(elfi.BOLFI property)
n_populations (elfi.methods.results.SmcSample property)
n_samples (elfi.methods.results.BolfiSample property)
(elfi.methods.results.BslSample property)
(elfi.methods.results.RomcSample property)
(elfi.methods.results.Sample property)
(elfi.methods.results.SmcSample property)
name (elfi.ElfiModel property)
nested_distance() (elfi.AdaptiveDistance method)
new_model() (in module elfi)
O
objective (elfi.methods.inference.parameter_inference.ParameterInference attribute)
observed (elfi.ElfiModel property)
open() (elfi.ArrayPool class method)
(elfi.OutputPool class method)
Operation (class in elfi)
OptimizationResult (class in elfi.methods.results)
output_names (elfi.ArrayPool property)
(elfi.methods.inference.parameter_inference.ParameterInference attribute)
(elfi.OutputPool property)
OutputPool (class in elfi)
P
parameter_names (elfi.AdaptiveDistanceSMC property)
(elfi.AdaptiveThresholdSMC property)
(elfi.BayesianOptimization property)
(elfi.BOLFI property)
(elfi.BSL property)
(elfi.ElfiModel property)
(elfi.methods.inference.parameter_inference.ParameterInference property)
(elfi.Rejection property)
(elfi.ROMC property)
(elfi.SMC property)
ParameterInference (class in elfi.methods.inference.parameter_inference)
parents (elfi.AdaptiveDistance property)
(elfi.Constant property)
(elfi.Discrepancy property)
(elfi.Distance property)
(elfi.Operation property)
(elfi.Prior property)
(elfi.RandomVariable property)
(elfi.Simulator property)
(elfi.Summary property)
path (elfi.ArrayPool property)
(elfi.OutputPool property)
plot_discrepancy() (elfi.BayesianOptimization method)
(elfi.BOLFI method)
plot_gp() (elfi.BayesianOptimization method)
(elfi.BOLFI method)
plot_marginals() (elfi.methods.results.BolfiSample method)
(elfi.methods.results.BslSample method)
(elfi.methods.results.RomcSample method)
(elfi.methods.results.Sample method)
(elfi.methods.results.SmcSample method)
plot_pairs() (elfi.methods.results.BolfiSample method)
(elfi.methods.results.BslSample method)
(elfi.methods.results.RomcSample method)
(elfi.methods.results.Sample method)
(elfi.methods.results.SmcSample method)
plot_params_vs_node() (in module elfi)
plot_state() (elfi.AdaptiveDistanceSMC method)
(elfi.AdaptiveThresholdSMC method)
(elfi.BayesianOptimization method)
(elfi.BOLFI method)
(elfi.BSL method)
(elfi.methods.inference.parameter_inference.ParameterInference method)
(elfi.Rejection method)
(elfi.ROMC method)
(elfi.SMC method)
plot_traces() (elfi.methods.results.BolfiSample method)
(elfi.methods.results.BslSample method)
pool (elfi.AdaptiveDistanceSMC property)
(elfi.AdaptiveThresholdSMC property)
(elfi.BayesianOptimization property)
(elfi.BOLFI property)
(elfi.BSL property)
(elfi.methods.inference.parameter_inference.ParameterInference attribute)
(elfi.methods.inference.parameter_inference.ParameterInference property)
(elfi.Rejection property)
(elfi.ROMC property)
(elfi.SMC property)
prepare_new_batch() (elfi.AdaptiveDistanceSMC method)
(elfi.AdaptiveThresholdSMC method)
(elfi.BayesianOptimization method)
(elfi.BOLFI method)
(elfi.BSL method)
(elfi.methods.inference.parameter_inference.ParameterInference method)
(elfi.Rejection method)
(elfi.ROMC method)
(elfi.SMC method)
Prior (class in elfi)
R
RandMaxVar (class in elfi.methods.bo.acquisition)
RandomVariable (class in elfi)
reference() (elfi.AdaptiveDistance class method)
(elfi.Constant class method)
(elfi.Discrepancy class method)
(elfi.Distance class method)
(elfi.Operation class method)
(elfi.Prior class method)
(elfi.RandomVariable class method)
(elfi.Simulator class method)
(elfi.Summary class method)
Rejection (class in elfi)
remove_batch() (elfi.ArrayPool method)
(elfi.OutputPool method)
remove_node() (elfi.ElfiModel method)
remove_store() (elfi.ArrayPool method)
(elfi.OutputPool method)
ROMC (class in elfi)
RomcSample (class in elfi.methods.results)
run() (elfi.TwoStageSelection method)
S
Sample (class in elfi.methods.results)
sample() (elfi.AdaptiveDistanceSMC method)
(elfi.AdaptiveThresholdSMC method)
(elfi.BOLFI method)
(elfi.BSL method)
(elfi.Rejection method)
(elfi.ROMC method)
(elfi.SMC method)
sample_means (elfi.methods.results.BolfiSample property)
(elfi.methods.results.BslSample property)
(elfi.methods.results.RomcSample property)
(elfi.methods.results.Sample property)
(elfi.methods.results.SmcSample property)
sample_means_and_95CIs (elfi.methods.results.BolfiSample property)
(elfi.methods.results.BslSample property)
(elfi.methods.results.RomcSample property)
(elfi.methods.results.Sample property)
(elfi.methods.results.SmcSample property)
sample_means_array (elfi.methods.results.BolfiSample property)
(elfi.methods.results.BslSample property)
(elfi.methods.results.RomcSample property)
(elfi.methods.results.Sample property)
(elfi.methods.results.SmcSample property)
sample_means_summary() (elfi.methods.results.BolfiSample method)
(elfi.methods.results.BslSample method)
(elfi.methods.results.RomcSample method)
(elfi.methods.results.Sample method)
(elfi.methods.results.SmcSample method)
sample_quantiles() (elfi.methods.results.BolfiSample method)
(elfi.methods.results.BslSample method)
(elfi.methods.results.RomcSample method)
(elfi.methods.results.Sample method)
(elfi.methods.results.SmcSample method)
sample_summary() (elfi.methods.results.BolfiSample method)
(elfi.methods.results.BslSample method)
(elfi.methods.results.RomcSample method)
(elfi.methods.results.Sample method)
(elfi.methods.results.SmcSample method)
samples_array (elfi.methods.results.BolfiSample property)
(elfi.methods.results.BslSample property)
(elfi.methods.results.RomcSample property)
(elfi.methods.results.Sample property)
(elfi.methods.results.SmcSample property)
samples_cov() (elfi.methods.results.RomcSample method)
save() (elfi.ArrayPool method)
(elfi.ElfiModel method)
(elfi.methods.results.BolfiSample method)
(elfi.methods.results.BslSample method)
(elfi.methods.results.RomcSample method)
(elfi.methods.results.Sample method)
(elfi.methods.results.SmcSample method)
(elfi.OutputPool method)
seed (elfi.AdaptiveDistanceSMC property)
(elfi.AdaptiveThresholdSMC property)
(elfi.BayesianOptimization property)
(elfi.BOLFI property)
(elfi.BSL property)
(elfi.methods.inference.parameter_inference.ParameterInference property)
(elfi.Rejection property)
(elfi.ROMC property)
(elfi.SMC property)
set_client() (in module elfi)
set_context() (elfi.ArrayPool method)
(elfi.OutputPool method)
set_default_model() (in module elfi)
set_objective() (elfi.AdaptiveDistanceSMC method)
(elfi.AdaptiveThresholdSMC method)
(elfi.BayesianOptimization method)
(elfi.BOLFI method)
(elfi.BSL method)
(elfi.methods.inference.parameter_inference.ParameterInference method)
(elfi.Rejection method)
(elfi.ROMC method)
(elfi.SMC method)
Simulator (class in elfi)
size (elfi.Prior property)
(elfi.RandomVariable property)
SMC (class in elfi)
SmcSample (class in elfi.methods.results)
solve_problems() (elfi.ROMC method)
state (elfi.AdaptiveDistance property)
(elfi.Constant property)
(elfi.Discrepancy property)
(elfi.Distance property)
(elfi.methods.inference.parameter_inference.ParameterInference attribute)
(elfi.Operation property)
(elfi.Prior property)
(elfi.RandomVariable property)
(elfi.Simulator property)
(elfi.Summary property)
Summary (class in elfi)
summary() (elfi.methods.results.BolfiSample method)
(elfi.methods.results.BslSample method)
(elfi.methods.results.RomcSample method)
(elfi.methods.results.Sample method)
(elfi.methods.results.SmcSample method)
T
TwoStageSelection (class in elfi)
U
UniformAcquisition (class in elfi.methods.bo.acquisition)
update() (elfi.AdaptiveDistanceSMC method)
(elfi.AdaptiveThresholdSMC method)
(elfi.BayesianOptimization method)
(elfi.BOLFI method)
(elfi.BSL method)
(elfi.methods.inference.parameter_inference.ParameterInference method)
(elfi.Rejection method)
(elfi.ROMC method)
(elfi.SMC method)
update_distance() (elfi.AdaptiveDistance method)
update_node() (elfi.ElfiModel method)
V
vectorize() (elfi.tools method)
visualize_region() (elfi.ROMC method)
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